Detecting genomic islands using bioinformatics approaches
Bacterial genomes contain clusters of genes that are acquired by horizontal transfer, called
genomic islands (GIs). GIs are frequently associated with microbial adaptations that are of …
genomic islands (GIs). GIs are frequently associated with microbial adaptations that are of …
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Abstract The Comprehensive Antibiotic Resistance Database (CARD; https://card. mcmaster.
ca) is a curated resource providing reference DNA and protein sequences, detection models …
ca) is a curated resource providing reference DNA and protein sequences, detection models …
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
Rhodococcus sp. RHA1 (RHA1) is a potent polychlorinated biphenyl-degrading soil
actinomycete that catabolizes a wide range of compounds and represents a genus of …
actinomycete that catabolizes a wide range of compounds and represents a genus of …
[HTML][HTML] Infection control in the new age of genomic epidemiology
Highlights•Advances in genome sequencing have allowed for its use in infection
control.•Genome sequencing provides higher resolution than conventional genotyping …
control.•Genome sequencing provides higher resolution than conventional genotyping …
The microbes of the intestine: an introduction to their metabolic and signaling capabilities
This article summarizes advances in the field of host-microbe interactions in the gut. The
human gut is home to a complex community of microbes (the microbiota) that plays a critical …
human gut is home to a complex community of microbes (the microbiota) that plays a critical …
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
Abstract The Comprehensive Antibiotic Resistance Database (CARD; card. mcmaster. ca)
combines the Antibiotic Resistance Ontology (ARO) with curated AMR gene (ARG) …
combines the Antibiotic Resistance Ontology (ARO) with curated AMR gene (ARG) …
[HTML][HTML] FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
The construction of high capacity data sharing networks to support increasing government
and commercial data exchange has highlighted a key roadblock: the content of existing …
and commercial data exchange has highlighted a key roadblock: the content of existing …
[HTML][HTML] Evidence of a large novel gene pool associated with prokaryotic genomic islands
Microbial genes that are “novel”(no detectable homologs in other species) have become of
increasing interest as environmental sampling suggests that there are many more such …
increasing interest as environmental sampling suggests that there are many more such …
[HTML][HTML] Evaluation of genomic island predictors using a comparative genomics approach
Abstract Background Genomic islands (GIs) are clusters of genes in prokaryotic genomes of
probable horizontal origin. GIs are disproportionately associated with microbial adaptations …
probable horizontal origin. GIs are disproportionately associated with microbial adaptations …
[HTML][HTML] Microbial transformation from normal oral microbiota to acute endodontic infections
Background Endodontic infections are a leading cause of oro-facial pain and tooth loss in
western countries, and may lead to severe life-threatening infections. These infections are …
western countries, and may lead to severe life-threatening infections. These infections are …